From my perspective at least ADFS was chosen before I was involved. I am just setting up the proof of concept and creating a design.
They just have ISA in place and are working through what will go and what will stay in the end. My guess is that unless ISA is doing more than just auth for them for a few apps like MOSS and OWA, they shouldn't really need it anymore since ADFS is taking over the auth role.
I'm going to install an ISA server in the lab and set it up and see if what Jim Harrison said could work. ISA does not do federation, but he mentioned that using IAG with ISA could then work with ADFS. I have no idea what that looks like yet, but I will let you know what I come up with in the lab.